Webto get the output in bam, use: samtools view -b -f 4 file.bam > unmapped.bam. To get only the mapped reads use the parameter F, which works like -v of grep and skips the alignments for a specific flag. samtools view -b -F 4 file.bam > mapped.bam. From the manual; there are different int codes you can use with the parameter f, based on what you ... WebThe Comprehensive R Archive Network CRAN is the biggest archive of R packages. There are few requirements for uploading packages besides building and installing successfully, hence documentation and support is often minimal and figuring how to use these packages can be a challenge it itself.
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